[ensembl-dev] VEP regulatory cache

cj5 at sanger.ac.uk cj5 at sanger.ac.uk
Wed Dec 5 09:12:48 GMT 2012


Hi

I am running the VEP, version 2.4 with the following options:
--regulatory
--offline
--sift b
--polyphen b
--condel b
--gene
--hgnc
--format vcf
--force_overwrite
--cache
--dir <dir to human cache>

and the script crashes with:

Can't call method "length" on unblessed reference
at /software/vertres/lib/all/ensembl/66/ensembl-variation/modules/Bio/EnsEMBL/Variation/Utils/VEP.pm line 1919, <STDIN> line 2154.

Removing the --offline option solves it, I guess the regulatory cache is incomplete?

Thanks
Chris








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