[ensembl-dev] Ensembl ids and RefSeq ids

Gustavo Franca gsfranca at gmail.com
Thu Aug 23 21:52:59 BST 2012


Hello,

I would like to retrieve a table with all human genes, containing Ensembl
Gene IDs, Ensembl Transcript IDs, Ensembl Protein IDs and their respective
RefSeq mRNA IDs and RefSeq peptide IDs. As an example, see the last table
(External references) shown in KIR2DL5A page:
http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000215764;r=GL000209.1:7891-96246

I realized that it is possible to get ID conversions via BioMart, however,
the BioMart output does not provide me the version of the RefSeq entry as
shown in the above example. (e.g: ENST00000344867    NP_055034.2
NM_014219.2). So, I would like to retrieve Ensembl transcripts and their
corresponding RefSeq versions.
Anyone could help me out on this?

Thank you very much,
Gustavo
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