[ensembl-dev] No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for...

[Nick Langridge]

Hi,

Multi-species view in EG Bacteria is broken at the moment - in the logs 
I'm seeing a number of warnings relating to MethodLinkSpeciesSet.
I'm not really sure what this is telling me, or where to start looking 
for the source of the problem.
Can anyone help me to understand these?

Cheers
Nick

-------------------- WARNING ----------------------
MSG: No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for
<BLASTZ_NET> and e_coli_k12(EB1_e_coli_k12), e_coli_042(EB1_e_coli_042)
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 654
CALLED BY: Compara/DBSQL/DnaAlignFeatureAdaptor.pm  LINE: 211
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for
<LASTZ_NET> and e_coli_k12(EB1_e_coli_k12), e_coli_042(EB1_e_coli_042)
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 654
CALLED BY: Compara/DBSQL/DnaAlignFeatureAdaptor.pm  LINE: 211
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for
<TRANSLATED_BLAT> and e_coli_k12(EB1_e_coli_k12), e_coli_042(EB1_e_coli_042)
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 654
CALLED BY: Compara/DBSQL/DnaAlignFeatureAdaptor.pm  LINE: 211
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: Meta table key 'max_align_2964' not defined and
old meta table key 'max_alignment_length' not defined
  -> using default value [20000]
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 797
CALLED BY: EnsEMBL/Compara/MethodLinkSpeciesSet.pm  LINE: 522
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No method_link matches <BLASTZ_RAW>
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 914
CALLED BY: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm  LINE: 647
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for
<BLASTZ_RAW> and e_coli_k12(EB1_e_coli_k12), e_coli_042(EB1_e_coli_042)
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 654
CALLED BY: Compara/DBSQL/DnaAlignFeatureAdaptor.pm  LINE: 211
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No method_link matches <BLASTZ_CHAIN>
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 914
CALLED BY: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm  LINE: 647
Ensembl API version = 66
---------------------------------------------------

-------------------- WARNING ----------------------
MSG: No Bio::EnsEMBL::Compara::MethodLinkSpeciesSet found for
<BLASTZ_CHAIN> and e_coli_k12(EB1_e_coli_k12), e_coli_042(EB1_e_coli_042)
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 654
CALLED BY: Compara/DBSQL/DnaAlignFeatureAdaptor.pm  LINE: 211
Ensembl API version = 66
---------------------------------------------------