[ensembl-dev] Variant effect predictor: regulatory information and MATRIX/HIGH_INF_POS
A. P. Levine
a.levine at ucl.ac.uk
Thu Oct 6 11:01:18 BST 2011
Thank you very much for your reply. MATRIX and HIGH_INF_POS are working online with the test input that you provided.
With respect to the regulatory feature annotation, you were correct; I did not have ensembl-functgenomics in my src directory. I have downloaded it. However, now when I run the script I get the following error message:
"DBD::mysql::st execute failed: Unknown column 'fs.experiment_id' in 'field list' at src/ensembl/modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm line 523, <GEN0> line 2026."
Do you know what the problem might be?
Thank you very much.
Adam P. Levine
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