[ensembl-dev] Bulding cache for vep script

Duarte Molha Duarte.Molha at ogt.co.uk
Mon Nov 21 15:57:56 GMT 2011


Dear Devs

I want to build my own cach from my local version of the ensembl database... I used the command:
variant_effect_predictor.pl -cache -dir /ReferenceData/ensembl_cache/our_cache --write_cache --build all  -i input.txt -host myHOST_SERVER  --password myPassword --user ensembl --port 3306

but I get back this error message:

Can't store CODE items at ../../lib/Storable.pm (autosplit into ../../lib/auto/Storable/_store_fd.al) line 304, at /array/dept/compbio/ensembl/current_api/ensembl-variation/modules/Bio/EnsEMBL/Variation/Utils/VEP.pm line 1978

Can you tell me what might be wrong?

Cheers

Duarte Molha

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