[ensembl-dev] cannot find "intron" "3'UTR" in embl multi-gene file

Wanmei wanmei_06 at yahoo.com
Fri Nov 4 20:42:43 GMT 2011


Hi, 


I have a question about the embl multi-gene data from ftp://ftp.ensembl.org/pub/release-64/embl/homo_sapiens/. I only found 6 FTs in that files: STS, mRNA, misc_RNA, exon, CDS, misc_feature. On the other hand, according to the embl readme file (feature_key), there should be 60 of them. I listed them below. so my question is why "intron" and "3'UTR" regions are not provided in the embl multi-gene data? I actually download two single-gene files to check this too, and both files also only have 6 FTs. 


Thanks,
Wanmei

Feature
Key           attenuator
Feature
Key           C_region
Feature
Key           CAAT_signal
Feature
Key           CDS
Feature Key          
D-loop
Feature
Key           D_segment
Feature
Key           enhancer
Feature
Key           exon
Feature
Key           gap
Feature
Key           GC_signal
Feature
Key           gene
Feature
Key           iDNA
Feature
Key           intron
Feature Key          
J_segment
Feature
Key           LTR
Feature
Key           mat_peptide
Feature
Key           misc_binding
Feature
Key           misc_difference
Feature
Key           misc_feature
Feature
Key           misc_recomb
Feature
Key           misc_RNA
Feature
Key           misc_signal
Feature
Key           misc_structure
Feature
Key           mobile_element
Feature
Key           modified_base
Feature
Key           mRNA
Feature Key        
  ncRNA
Feature
Key           N_region
Feature
Key           old_sequence
Feature
Key           operon
Feature
Key           oriT
Feature
Key           polyA_signal
Feature
Key           polyA_site
Feature
Key           precursor_RNA
Feature
Key           prim_transcript
Feature
Key           primer_bind
Feature Key          
promoter
Feature
Key           protein_bind
Feature
Key           RBS
Feature
Key           repeat_region
Feature
Key           rep_origin
Feature
Key           rRNA
Feature
Key           S_region
Feature
Key           sig_peptide
Feature
Key           source
Feature
Key           stem_loop
Feature
Key           STS
Feature
Key           TATA_signal
Feature
Key           terminator
Feature
Key           tmRNA
Feature
Key           transit_peptide
Feature
Key           tRNA
Feature
Key           unsure
Feature
Key           V_region
Feature
Key           V_segment
Feature
Key           variation
Feature
Key           3'UTR
Feature
Key           5'UTR
Feature Key        
  -10_signal
Feature
Key           -35_signal
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