[ensembl-dev] exon coordinate discrepancy between NCBI and Ensembl

Reece Hart reece at harts.net
Tue May 24 20:53:58 BST 2011

On Tue, May 24, 2011 at 2:58 AM, Fiona Cunningham <fiona at ebi.ac.uk> wrote:

> I don't suppose you have heard of the LRG project?

I am. In fact, I think you and I talked about it last year at HVP.

The use cases for us are to curate published variants, convert them among
genome, transcript, and protein coordinate systems, and to communicate them
to doctors. If I were choosing, I probably would use LRG for some of this.
Or, am I missing something -- do you see a way for me to use LRG for these

Please see the tail of my reply to Paul. I'm considering adding NCBI exon
structures verbatim to a local Ensembl instance. It would be great to know
that this is easy. Or that there are scripts already. Or that it's an insane

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