[ensembl-dev] Allele table in Variation DB
Stuart Meacham
sm766 at cam.ac.uk
Mon May 16 11:28:45 BST 2011
Hi there,
I was wondering why you get entries like this in the allele table:
select allele_id, allele, frequency, count from allele where
variation_id = 4843210 and subsnp_id = 231810106 and sample_id = 12131;
+-----------+--------+-----------+-------+
| allele_id | allele | frequency | count |
+-----------+--------+-----------+-------+
| 401222449 | A | 0.558333 | 67 |
| 401222450 | C | 0 | 0 |
| 401222451 | G | 0.441667 | 53 |
+-----------+--------+-----------+-------+
What is the point of the C allele entry? What exactly does it mean?
Cheers
Stuart
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