[ensembl-dev] Allele table in Variation DB

Stuart Meacham sm766 at cam.ac.uk
Mon May 16 11:28:45 BST 2011


Hi there,

I was wondering why you get entries like this in the allele table:

select allele_id, allele, frequency, count from allele where 
variation_id = 4843210 and subsnp_id = 231810106 and sample_id = 12131;
+-----------+--------+-----------+-------+
| allele_id | allele | frequency | count |
+-----------+--------+-----------+-------+
| 401222449 | A      |  0.558333 |    67 |
| 401222450 | C      |  0        |    0  |
| 401222451 | G      |  0.441667 |    53 |
+-----------+--------+-----------+-------+

What is the point of the C allele entry? What exactly does it mean?

Cheers

Stuart




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