[ensembl-dev] 1000 Genome snp sets in Ensembl 61

Tjaart de Beer tjaart at ebi.ac.uk
Thu Mar 10 10:34:36 GMT 2011


Hi all

I am currently trying to look at the 1000 Genome nsSNPs found in Ensembl.
I have a few questions:

1. If a nsSNP was found in the 1000 Genome project but it already had a
dbSNP id, would this be part of one of the 1000 Genome sets in Ensembl? Or
would it be ignored? Or alternatively, does the 1000 Genome sets found in
Ensembl only include the novel nsSNPs found?

2. Is the amino acid position reported for a nsSNP the position as found
in the reference protein sequence? Or just for that specific transcript?

Thanks!
Tjaart





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