[ensembl-dev] How to update sequences in a compara tree object

Sébastien Moretti sebastien.moretti at unil.ch
Tue Mar 1 14:21:20 GMT 2011


Hi

I use compara tree to fetch and edit trees.
e.g.:
    my $tree = $protein_tree_adaptor->fetch_node_by_node_id('870377');
    ...


I can easily remove tree nodes but don't know how to update a sequence 
into the tree object.
Data::Dumper provides a huge data structure.
Too huge to be searchable easily.

So, is there a way to update sequence in the tree object without 
changing data in MySQL ?

Thanks

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://bioinfo.unil.ch/




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