[ensembl-dev] api v60 to v62

mailsvl at fastmail.fm mailsvl at fastmail.fm
Fri Jun 24 15:23:31 BST 2011


Hi everyone,

We have a script based on ensembl api v60 (where it works without
errors) and it almost runs flawless with v62 as well except for one
error:

Can't call method "display_term" on an undefined value at
/data/common_modules/ensembl62/ensembl-variation/modules/Bio/EnsEMBL/Variation/VariationFeatureOverlap.pm
line 530.

If I remove this call/line everything runs fine:

$consequence = $transcript_variation->display_consequence if defined
$transcript_variation->display_consequence;

...but then I'm left without the consequences so thats not really an
option ;) Anyone knows what change from v60 to v62 makes this method now
run into problems?

Thanks!
Stef
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