[ensembl-dev] Problem to access Ensembl 62 archive using biomaRt
Frederic Bastian
frederic.bastian at unil.ch
Thu Jul 14 16:25:34 BST 2011
Hi everyone,
I wanted to access Ensembl 62 using the biomaRt package for R, but it
seems to be an issue with the list of datasets available.
The following command works fine for Ensembl 61:
mart <- useMart( "ENSEMBL_MART_ENSEMBL",
dataset="hsapiens_gene_ensembl", host="feb2011.archive.ensembl.org")
But fails for Ensembl 62 (host="apr2011.archive.ensembl.org"). It seems
there is no dataset available:
mart <- useMart( "ENSEMBL_MART_ENSEMBL", host="apr2011.archive.ensembl.org")
listDatasets(mart) # returns no result
Thank you for your help,
Frederic.
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