[ensembl-dev] assembly gaps of a genome.

[jonathan myles]

Hello,

is the olny/best way of finding the assembly gaps of a genome:

For each chromosome

1) make a slice of that chromosome
2) get all the clones,
3) process the starts and ends in PERL (or another language after sending
them to a file) to find the bps not covered by these?

Thanks

Jonathan
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