[ensembl-dev] getting gene exons and transcripts that overlap only the original slice

[Alison Meynert]

Just putting this onto the list from Damian @ Ensembl.

On 12/01/2011 10:38, Damian Keefe wrote:
>
> The short answer is don't use Mysql its hopeless for looking at overlaps.
>
> There is a script in the ensembl codebase
>
> ensembl-functgenomics/scripts/miscellaneous/cooccur.pl
>
> which I use all the time for looking at the overlap of two large sets of
> genomic features. Its pretty well documented. It might suit your purposes.
>
> cheers
>
> Damian
>
>
>

-- 
Alison Meynert
MRC Human Genetics Unit, Edinburgh
alison.meynert at hgu.mrc.ac.uk