[ensembl-dev] Diffrence in results of online and standalone API version of variant effect predictor

[ketan padiya]

Hi!

I used online variant effect predictor for variant analysis and downloaded
results, then i also used variant effect predictor perl script API from my
pc providing vcf file and i got the result.
But when i compare both results i find many variants (skipped in one file
and present in other file) are not common in files, i think they should be
there.
My vcf file did contain 1758 variants (rows) but using perl script API
version applying -w mode only gave annotation for 1053 variants.
Why this differences are there?

Thanks.

-- 
Ketan Padiya
Research Fellow
Anand Veterinary College
Gujarat
India.
+91 9428969448
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