[ensembl-dev] ensemblgenomes compara databases

[Dan Staines]

On 02/23/2011 12:54 PM, Dan Staines wrote:
> Pan compara is just another peptide compara database so the same should
> apply.

One thing to note here is that pan also contains protein family data as 
well:
http://metazoa.ensembl.org/info/docs/compara/family.html
This means that the genome_db table ends up with more entries than are 
used in the peptide homology comparisons alone, so you need to use the 
species_set/method_link tables as well rather than just relying on 
genome_db.

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/