[ensembl-dev] ensemblgenomes compara databases

Dan Staines dstaines at ebi.ac.uk
Wed Feb 23 12:57:47 GMT 2011

On 02/23/2011 12:54 PM, Dan Staines wrote:
> Pan compara is just another peptide compara database so the same should
> apply.

One thing to note here is that pan also contains protein family data as 
This means that the genome_db table ends up with more entries than are 
used in the peptide homology comparisons alone, so you need to use the 
species_set/method_link tables as well rather than just relying on 

Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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