[ensembl-dev] Rendering deletions in BAM files

Fedor Gusev gusevfe at gmail.com
Tue Aug 30 09:06:03 BST 2011


Hello.

I think BAM rendering code has an error. Basically, the cigar string
is threated the wrong way. It has the form ([0-9]*[MDISN])* while code
assumes ([MDISN][0-9]*)* . This results in everything being threated
as match and no deletions are shown.

Attach patch fixes it.

-- 
Kind regards,
Fedor Gusev.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: bam.patch
Type: text/x-patch
Size: 724 bytes
Desc: not available
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20110830/d72c53e5/attachment.bin>


More information about the Dev mailing list