[ensembl-dev] Gata1

David Thomas David.Thomas at sussex.ac.uk
Mon Aug 8 09:35:05 BST 2011


Hi

I'm trying to extract specific TFBS information using the funcgen API. I can find most of the information I need but nothing on Gata1.

I drill down as follows:

@reg_feats = @{$regfeat_adaptor->fetch_all_by_Slice($slice)};
foreach my $rf (@reg_feats){ 
	…..	
	foreach my $feature (@{$rf->regulatory_attributes()}){
		….
		my @motif_features = @{$rf->regulatory_attributes('motif')};
		foreach my $motif_feature (@motif_features) {
			……
			my $afs = $motif_feature->associated_annotated_features();	
	 		foreach my $feat (@$afs){
				.....

Looking at the displaylabels in each of the levels I can find no information on Gata1.

Apologies if this is a naive question but any help gratefully received.

David





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