[ensembl-dev] Gata1
David Thomas
David.Thomas at sussex.ac.uk
Mon Aug 8 09:35:05 BST 2011
Hi
I'm trying to extract specific TFBS information using the funcgen API. I can find most of the information I need but nothing on Gata1.
I drill down as follows:
@reg_feats = @{$regfeat_adaptor->fetch_all_by_Slice($slice)};
foreach my $rf (@reg_feats){
…..
foreach my $feature (@{$rf->regulatory_attributes()}){
….
my @motif_features = @{$rf->regulatory_attributes('motif')};
foreach my $motif_feature (@motif_features) {
……
my $afs = $motif_feature->associated_annotated_features();
foreach my $feat (@$afs){
.....
Looking at the displaylabels in each of the levels I can find no information on Gata1.
Apologies if this is a naive question but any help gratefully received.
David
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