[ensembl-dev] [EnsemblGenomes] $NCBI_taxon_adaptor->fetch_node_by_name() not working for some divisions

[Daniel Hughes]

Not very familiar with Compara, but perhaps:

mysql> use aspergillus_nidulans_core_6_59_6e
Database changed
mysql> select meta_value from meta where meta_key = 'species.taxonomy_id' \G
*************************** 1. row ***************************
meta_value: 162425
1 row in set (0.09 sec)

mysql> use ensembl_compara_metazoa_6_59
Database changed
mysql> select * from ncbi_taxa_name where name like 'Aspergillus nidulans'
\G
*************************** 1. row ***************************
  taxon_id: 162425
      name: Aspergillus nidulans
name_class: genbank anamorph
1 row in set (0.10 sec)

mysql> use ensembl_compara_fungi_6_59
Database changed
mysql> select * from ncbi_taxa_name where name like 'Aspergillus nidulans'
\G
Empty set (0.12 sec)

Dan

Daniel S. T. Hughes M.Biochem (Hons; Oxford), Ph.D (Cambridge)
-------------------------------------------------------------------------------------
dsth at cantab.net
dsth at cpan.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20100925/acedf8b0/attachment.html>