[ensembl-dev] R59: -stepSize=5 in blat_gfclient.pm
hiram at soe.ucsc.edu
Thu Sep 23 17:01:25 BST 2010
The case on the arguments is important. It is -stepSize
See also: http://www.kentinformatics.com/contact-us.html
volker.weinberger at novartis.com wrote:
> I'm confused about the option settings for gfClient in
> modules/Bio/Tools/Run/Search/blat_gfclient.pm :
> "-out=wublast -stepSize=5 -minScore=20"
> as our internal version of gfClient (from BLAT34) doesn't support the
> "-stepsize" option.
> Do you use a customized version of BLAT or any version other than 34 ?
> BTW it would be great if the path to the gfClient executable was
> configurable in one of the configuration files rather than hard-coded.
> Best regards,
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