[ensembl-dev] variation api - mapping between dbsnp and ensembl
Andrea Edwards
edwardsa at cs.man.ac.uk
Tue Nov 30 13:00:28 GMT 2010
Hello
I have written a small script to get all of the known snps for cow from
ensembl. I have been told the only variation data for cow in ensembl is
from dbSNP
Questions
1. How do i know which build of dbsnp is used in a particular ensembl
build? I have not been able to find any release information for the
external databases used by a particular ensembl release
2. How do i know that the genome build of the variation in dbsnp is the
same as the genome build in ensembl. If i look at a cow snp in dbsnp it
tells me what genome build it is associated with. What happens if the
ensembl database is mapped to a different genome assembly than dbSNP?
thanks
More information about the Dev
mailing list