[ensembl-dev] why does ensembl have multiple dbSNP records for the same locus
Andrea Edwards
edwardsa at cs.man.ac.uk
Mon Nov 29 17:16:46 GMT 2010
Hi
I have written a program to get all of the cow snps from ensembl present
in dbSNP. When i examine these snps i find some chromosome loci have
multiple dbSNP records. In other words if i do something like
select count(*) distinct chromosome, locus from snps
i get less than the total number of snps obtained
Why is this? Is this something to do with ensembl or dbSNP. I thought
dbSNP merged all submitter records (ss) into one rs record for each
chromosome locus. So i was expecting one dbSNP record per snp. I thought
perhaps it might a representation of the snp in a different database but
i have been informed that the only variations for cow in ensembl are
from dbSNP.
thanks a lot
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