[ensembl-dev] Annotation discrepancy

[Oliver, Gavin]

I have a few more examples of discrepancies which will hopefully help.

 

For all examples, the search was performed on Entrez ID but returned
nothing.  I have looked a bit deeper into a handful of examples.
Details below:

 

Entrez ID 150000           Associated gene Symbol ABCC13 in database but
with no associated entrez ID

Entrez ID  51275            Associated gene symbol C12orf47 in database
but no associated entrez ID

Entrez ID  55449            Associated gene symbol C14orf167 in database
but no associated entrez ID

Entrez ID  57126            Associated gene symbol CD177 in database
with no associated entrez id

Entrez ID  984               Associated gene symbol CDK11B is not in
database.  CDK11A is in database but is annotated as cyclin-dependent
kinase 11B with entrez id 100294398 which entrez describes as
LOC100294398 (cell division protein kinase 11B-like).

Entrez ID  503646          Neither this ID nor associated gene symbol
DPRXP5 are in the database.

Entrez ID  8857              Associated gene symbol FCGBP (Fc fragment
of IgG binding protein) is there but with Entrez gene ID 100133944 which
corresponds to LOC100133944 IgGFc-binding protein-like.

Entrez ID  8693              Neither this ID nor associated gene symbol
GALNT4 are in the database.

Entrez ID  9026              Gene symbol HIP1R (huntingtin interacting
protein 1 related) is in the database but with entrez ID 100294412 which
corresponds to huntingtin-interacting protein 1-related protein-like

 

Best, 

 

Gavin

 

 

 

________________________________

From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf
Of Oliver, Gavin
Sent: 19 November 2010 10:29
To: dev at ensembl.org
Subject: [ensembl-dev] Annotation discrepancy

 

Hi all, 

 

I have been using Ensembl human for internal annotation of microarrays.

 

Yesterday someone did a search for Entrez Gene ID 3336 in our database.
It returned no hits.  

 

When they searched with the Gene symbol for this ID (HSPE1), they got 5
hits but the Entrez ID associated with the gene was 100132346 (and not
3336 as would be expected).

 

I ran a search for 100132346 against the Ensembl genome browser and it
brings back 2 genes on 2 different chromosomes.

 

Can someone explain what might be happening here?

 

Best, 

 

Gavin

 

 

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