[ensembl-dev] name of node for reconstructed ancestral
Lel Eory
lel.eory at ed.ac.uk
Wed Nov 10 14:57:24 GMT 2010
Hello there,
Is there a way to get the name for the reconstructed ancestral node in a
multiple sequence alignment through the perl API?
E.g. when I get the 6 primates EPO alignment for a slice I can get the
name for the leaves like "homo_sapiens", but for the reconstructed
ancestrals I only get "ancestral_sequences".
How can I get the newick formatted "definition" for the nodes like
"(homo_sapiens,pan_troglodytes)" as it is shown on the website?
Is this information stored somewhere or is it specified based on the
order of sequences in the multiple sequence alignment?
Thanks,
Lel
_____________________________________________________________________
Lel Eory
Institute of Evolutionary Biology
The University of Edinburgh
Ashworth Laboratories
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The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
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