[Dev] [ensembl-dev] Reference SNP

[Glenn Proctor]

On Tue, Jul 27, 2010 at 2:36 PM, Stuart Meacham <sm766 at cam.ac.uk> wrote:
> On 27/07/10 14:30, Ewan Birney wrote:
>>
>> I think the idea is that this should be an API call (and might in the
>> future
>> be implemented in a different way); certainly we will expect more
>> reference vs
>> non reference positioning issues.
>>
>> So - $vf->is_reference(); # returns 1 if on the reference chromosome
>
> This would be perfect - until this happens I shall implement a variation of
> Will's solution.

We will look at implementing the generic method for Ensembl release 60.

Regards

Glenn.