[ensembl-dev] EFG Array Mapping v59 Error

[Oliver, Gavin]

Hi, 

 

I have just run an array mapping and it looks like it completed ok but
at the very final stage I got an error message:

 

DBD::mysql::db do failed: You have an error in your SQL syntax; check
the manual that corresponds to your MySQL server version for the right
syntax to use near '.status_name_id from array a, status_name sn where
a.name in (ADXCRCG2a520319) a' at line 1 at
/cluster_progs/data/Ensembl/59/ensembl/modules//Bio/EnsEMBL/DBSQL/DBConn
ection.pm line 683.

2035.02user 23.27system 1:46:23elapsed 32%CPU (0avgtext+0avgdata
0maxresident)k

0inputs+0outputs (0major+751645minor)pagefaults 0swaps

ps -ef | grep 'probe2transcript' to find out if it is still running

 

Anyone recognize it?

 

Best, 

 

Gavin

 

 


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