From bmoore at ebi.ac.uk Thu Oct 6 09:11:06 2016 From: bmoore at ebi.ac.uk (Ben Moore) Date: Thu, 6 Oct 2016 09:11:06 +0100 Subject: [ensembl-announce] Ensembl 86 is out! Message-ID: We are pleased to announce that the latest Ensembl update (e!86) has been released: http://www.ensembl.org/ Highlights of this release include: - Genome annotation for 16 mouse strains - Chicken: new assembly and gene build - Macaque: new assembly and gene build - Mouse lemur: new assembly and gene build - New lincRNA data A complete list of the changes in release 86 can be found at: http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at: http://www.ensembl.info The release 86 blog post can be viewed here: http://www.ensembl.info/blog/2016/10/05/ensembl-86-has-been-released/ The e86 webinar is planned for Tuesday 11th October at 16:00 BST, please register using the following URL. Registration is free. https://attendee.gototraining.com/r/6500618785219013378 Regards, Ben On behalf of the Ensembl team Ben Moore Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK bmoore at ebi.ac.uk +44 (0)1223 494265 -------------- next part -------------- An HTML attachment was scrubbed... URL: From hsparrow at ebi.ac.uk Mon Oct 17 12:02:06 2016 From: hsparrow at ebi.ac.uk (Helen Sparrow) Date: Mon, 17 Oct 2016 12:02:06 +0100 Subject: [ensembl-announce] e!87: Summary of Declarations of Intentions Message-ID: <9DFA282B-2893-4DD2-B356-493C71759BB6@ebi.ac.uk> Dear all, Please find the summary of the declarations of intentions for release 87 (scheduled for the 29th of November 2016) on our public website: admin.ensembl.org/Changelog/Summary . Note that these are intentions and are not guaranteed to be in the release. Thanks, Helen _ _ Helen Sparrow Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK -------------- next part -------------- An HTML attachment was scrubbed... URL: From ayates at ebi.ac.uk Mon Oct 17 12:30:01 2016 From: ayates at ebi.ac.uk (Andrew Yates) Date: Mon, 17 Oct 2016 12:30:01 +0100 Subject: [ensembl-announce] Ensembl Helpdesk Downtime: 24th-27th October Message-ID: Ensembl Helpdesk is migrating to a new RT infrastructure on the week commencing the 24th October. During this period helpdesk at ensembl.org will be unavailable. The migration is due to start at 9am BST 24th October and finish by 12pm BST 27th October. Any email sent to helpdesk at ensembl.org will be queued and then released once we have confirmed the successful migration of our infrastructure. You will not receive notification of the queued email. Please refrain from sending multiple requests in. We will send an email to announce at ensembl.org to confirm once our helpdesk is open again. dev at ensembl.org is unaffected by this move and will be available for you to send questions to. Should you have any other queries please do not hesitate to contact helpdesk or myself. Many thanks, Andy Yates ------------ Andrew Yates - Genomics Technology Infrastructure Team Leader The European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge CB10 1SD, United Kingdom Tel: +44-(0)1223-492538 Fax: +44-(0)1223-494468 Skype: andy.yates.ebi http://www.ebi.ac.uk/ http://www.ensembl.org/ From ayates at ebi.ac.uk Fri Oct 21 12:37:19 2016 From: ayates at ebi.ac.uk (Andrew Yates) Date: Fri, 21 Oct 2016 12:37:19 +0100 Subject: [ensembl-announce] Ensembl Helpdesk Downtime: 24th-27th October - Postponed In-Reply-To: References: Message-ID: <4BF3AE38-8B2C-4768-A9A8-2CB710C48ABC@ebi.ac.uk> Please be aware we have postponed the work detailed below. Helpdesk will be available next week. We will be in touch soon with the new date. Thanks Andy Yates ------------ Andrew Yates - Genomics Technology Infrastructure Team Leader The European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge CB10 1SD, United Kingdom Tel: +44-(0)1223-492538 Fax: +44-(0)1223-494468 Skype: andy.yates.ebi http://www.ebi.ac.uk/ http://www.ensembl.org/ > On 17 Oct 2016, at 12:30, Andrew Yates wrote: > > Ensembl Helpdesk is migrating to a new RT infrastructure on the week commencing the 24th October. During this period helpdesk at ensembl.org will be unavailable. > > The migration is due to start at 9am BST 24th October and finish by 12pm BST 27th October. Any email sent to helpdesk at ensembl.org will be queued and then released once we have confirmed the successful migration of our infrastructure. You will not receive notification of the queued email. Please refrain from sending multiple requests in. We will send an email to announce at ensembl.org to confirm once our helpdesk is open again. > > dev at ensembl.org is unaffected by this move and will be available for you to send questions to. > > Should you have any other queries please do not hesitate to contact helpdesk or myself. > > Many thanks, > > Andy Yates > > ------------ > Andrew Yates - Genomics Technology Infrastructure Team Leader > The European Bioinformatics Institute (EMBL-EBI) > Wellcome Genome Campus > Hinxton, Cambridge > CB10 1SD, United Kingdom > Tel: +44-(0)1223-492538 > Fax: +44-(0)1223-494468 > Skype: andy.yates.ebi > http://www.ebi.ac.uk/ > http://www.ensembl.org/ > From bmoore at ebi.ac.uk Mon Oct 31 16:52:14 2016 From: bmoore at ebi.ac.uk (Ben Moore) Date: Mon, 31 Oct 2016 16:52:14 +0000 Subject: [ensembl-announce] Ensembl Genomes 33 is out! Message-ID: <1BE509D1-1408-4EA5-823F-5B3B44C09947@ebi.ac.uk> Dear all, We are delighted to announce that the latest update of Ensembl Genomes (EG33) has been released. Highlights of this release include: Incorporation of the Araport 11 gene model annotation for Arabidopsis thaliana. Addition of mitochondrial and plastid genome sequences to the current maize (Zea mays) chromosomal assembly (AGPv4). Alignment between the A, B and D genomes of bread wheat (Triticum aestivum) updated to use TGACv1 genome assemblies. Whole genome alignment between bread wheat and Brachypodium distachyon. Updated peptide comparative genomics for Plants and Fungi. Updated BioMarts for Plants and Fungi. Updated protein features from InterPro for Plants, Metazoa, Protists and Fungi. Check out all the changes on our Ensembl Genomes website (www.ensemblgenomes.org ) and on on our blog (www.ensembl.info ) Any questions or comments? E-mail us: helpdesk at ensemblgenomes.org Best wishes, The Ensembl Genomes team @ensemblgenomes Ben Moore Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK bmoore at ebi.ac.uk +44 (0)1223 494265 -------------- next part -------------- An HTML attachment was scrubbed... URL: From bmoore at ebi.ac.uk Thu Oct 6 09:11:06 2016 From: bmoore at ebi.ac.uk (Ben Moore) Date: Thu, 6 Oct 2016 09:11:06 +0100 Subject: [ensembl-announce] Ensembl 86 is out! Message-ID: We are pleased to announce that the latest Ensembl update (e!86) has been released: http://www.ensembl.org/ Highlights of this release include: - Genome annotation for 16 mouse strains - Chicken: new assembly and gene build - Macaque: new assembly and gene build - Mouse lemur: new assembly and gene build - New lincRNA data A complete list of the changes in release 86 can be found at: http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at: http://www.ensembl.info The release 86 blog post can be viewed here: http://www.ensembl.info/blog/2016/10/05/ensembl-86-has-been-released/ The e86 webinar is planned for Tuesday 11th October at 16:00 BST, please register using the following URL. Registration is free. https://attendee.gototraining.com/r/6500618785219013378 Regards, Ben On behalf of the Ensembl team Ben Moore Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK bmoore at ebi.ac.uk +44 (0)1223 494265 -------------- next part -------------- An HTML attachment was scrubbed... URL: From hsparrow at ebi.ac.uk Mon Oct 17 12:02:06 2016 From: hsparrow at ebi.ac.uk (Helen Sparrow) Date: Mon, 17 Oct 2016 12:02:06 +0100 Subject: [ensembl-announce] e!87: Summary of Declarations of Intentions Message-ID: <9DFA282B-2893-4DD2-B356-493C71759BB6@ebi.ac.uk> Dear all, Please find the summary of the declarations of intentions for release 87 (scheduled for the 29th of November 2016) on our public website: admin.ensembl.org/Changelog/Summary . Note that these are intentions and are not guaranteed to be in the release. Thanks, Helen _ _ Helen Sparrow Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK -------------- next part -------------- An HTML attachment was scrubbed... URL: From ayates at ebi.ac.uk Mon Oct 17 12:30:01 2016 From: ayates at ebi.ac.uk (Andrew Yates) Date: Mon, 17 Oct 2016 12:30:01 +0100 Subject: [ensembl-announce] Ensembl Helpdesk Downtime: 24th-27th October Message-ID: Ensembl Helpdesk is migrating to a new RT infrastructure on the week commencing the 24th October. During this period helpdesk at ensembl.org will be unavailable. The migration is due to start at 9am BST 24th October and finish by 12pm BST 27th October. Any email sent to helpdesk at ensembl.org will be queued and then released once we have confirmed the successful migration of our infrastructure. You will not receive notification of the queued email. Please refrain from sending multiple requests in. We will send an email to announce at ensembl.org to confirm once our helpdesk is open again. dev at ensembl.org is unaffected by this move and will be available for you to send questions to. Should you have any other queries please do not hesitate to contact helpdesk or myself. Many thanks, Andy Yates ------------ Andrew Yates - Genomics Technology Infrastructure Team Leader The European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge CB10 1SD, United Kingdom Tel: +44-(0)1223-492538 Fax: +44-(0)1223-494468 Skype: andy.yates.ebi http://www.ebi.ac.uk/ http://www.ensembl.org/ From ayates at ebi.ac.uk Fri Oct 21 12:37:19 2016 From: ayates at ebi.ac.uk (Andrew Yates) Date: Fri, 21 Oct 2016 12:37:19 +0100 Subject: [ensembl-announce] Ensembl Helpdesk Downtime: 24th-27th October - Postponed In-Reply-To: References: Message-ID: <4BF3AE38-8B2C-4768-A9A8-2CB710C48ABC@ebi.ac.uk> Please be aware we have postponed the work detailed below. Helpdesk will be available next week. We will be in touch soon with the new date. Thanks Andy Yates ------------ Andrew Yates - Genomics Technology Infrastructure Team Leader The European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge CB10 1SD, United Kingdom Tel: +44-(0)1223-492538 Fax: +44-(0)1223-494468 Skype: andy.yates.ebi http://www.ebi.ac.uk/ http://www.ensembl.org/ > On 17 Oct 2016, at 12:30, Andrew Yates wrote: > > Ensembl Helpdesk is migrating to a new RT infrastructure on the week commencing the 24th October. During this period helpdesk at ensembl.org will be unavailable. > > The migration is due to start at 9am BST 24th October and finish by 12pm BST 27th October. Any email sent to helpdesk at ensembl.org will be queued and then released once we have confirmed the successful migration of our infrastructure. You will not receive notification of the queued email. Please refrain from sending multiple requests in. We will send an email to announce at ensembl.org to confirm once our helpdesk is open again. > > dev at ensembl.org is unaffected by this move and will be available for you to send questions to. > > Should you have any other queries please do not hesitate to contact helpdesk or myself. > > Many thanks, > > Andy Yates > > ------------ > Andrew Yates - Genomics Technology Infrastructure Team Leader > The European Bioinformatics Institute (EMBL-EBI) > Wellcome Genome Campus > Hinxton, Cambridge > CB10 1SD, United Kingdom > Tel: +44-(0)1223-492538 > Fax: +44-(0)1223-494468 > Skype: andy.yates.ebi > http://www.ebi.ac.uk/ > http://www.ensembl.org/ > From bmoore at ebi.ac.uk Mon Oct 31 16:52:14 2016 From: bmoore at ebi.ac.uk (Ben Moore) Date: Mon, 31 Oct 2016 16:52:14 +0000 Subject: [ensembl-announce] Ensembl Genomes 33 is out! Message-ID: <1BE509D1-1408-4EA5-823F-5B3B44C09947@ebi.ac.uk> Dear all, We are delighted to announce that the latest update of Ensembl Genomes (EG33) has been released. Highlights of this release include: Incorporation of the Araport 11 gene model annotation for Arabidopsis thaliana. Addition of mitochondrial and plastid genome sequences to the current maize (Zea mays) chromosomal assembly (AGPv4). Alignment between the A, B and D genomes of bread wheat (Triticum aestivum) updated to use TGACv1 genome assemblies. Whole genome alignment between bread wheat and Brachypodium distachyon. Updated peptide comparative genomics for Plants and Fungi. Updated BioMarts for Plants and Fungi. Updated protein features from InterPro for Plants, Metazoa, Protists and Fungi. Check out all the changes on our Ensembl Genomes website (www.ensemblgenomes.org ) and on on our blog (www.ensembl.info ) Any questions or comments? E-mail us: helpdesk at ensemblgenomes.org Best wishes, The Ensembl Genomes team @ensemblgenomes Ben Moore Ensembl Outreach Officer European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK bmoore at ebi.ac.uk +44 (0)1223 494265 -------------- next part -------------- An HTML attachment was scrubbed... URL: