From amonida at ebi.ac.uk Tue Dec 8 13:36:46 2015 From: amonida at ebi.ac.uk (Amonida Zadissa) Date: Tue, 08 Dec 2015 13:36:46 +0000 Subject: [ensembl-announce] Ensembl e83 is out! Message-ID: <5666DCEE.8000100@ebi.ac.uk> We are pleased to announce that the latest Ensembl update (e!83) has been released: http://www.ensembl.org/ Highlights of this release include: * Human: gene set updated to GENCODE 24, and new assembly patches (GRCh38.p5) * Manhattan plot track for LD * Advanced Filtering and Counts on Variant table * Minor allele frequency (MAF) filter on sequence mark-up views A complete list of the changes in release 83 can be found at http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at http://www.ensembl.info The release 83 blog post can be viewed here: http://www.ensembl.info/blog/2015/12/08/ensembl-83-has-been-released/ The e83 webinar is planned for Wednesday 16th Dec at 16:00 GMT, please register using the following URL. Registration is free. http://www.ebi.ac.uk/training/events/2015/ensembl-release-83-webinar Best regards, Amonida -- Amonida Zadissa Ensembl Production European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK From denise at ebi.ac.uk Wed Dec 16 08:29:15 2015 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Wed, 16 Dec 2015 08:29:15 +0000 Subject: [ensembl-announce] Ensembl Genomes release 30 is out! Message-ID: Dear all, We are delighted to announce that the latest update of Ensembl Genomes has been released. Highlights of this release include: ? Molecular and biological information from PHI-base (version 4.0) for thousands of genes in Protists and Fungi that are involved in pathogen-host interactions ? Small non-coding RNA genes in the diatom Phaeodactylum tricornutum (Rogato et al. 2014 ) ? Software update: version 83 of the Ensembl project for all our 30,586 genomes from 5,319 species ? Improved image export functionality from our websites ? Protein domains for Protists, Metazoa , Fungi and Plants recalculated with InterProScan (version 54.0) ? Updated BioMart: Protists, Metazoa, Fungi and Plants ? Updated gene trees in Plants Check out all the changes on our Ensembl Genomes website. Any questions or comments? Email us . Best wishes, The Ensembl Genomes team @ensemblgenomes -------------- next part -------------- An HTML attachment was scrubbed... URL: From dstaines at ebi.ac.uk Sat Dec 19 10:11:30 2015 From: dstaines at ebi.ac.uk (Dan Staines) Date: Sat, 19 Dec 2015 10:11:30 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 31 Intentions Message-ID: <2e5615b3d2757d7336676d6c17de2463@ebi.ac.uk> Release 31 of Ensembl Genomes is scheduled for 15th March 2016 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/31 Please note these are intentions and are therefore not guaranteed to be completed at release time. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Genomics Technology Infrastructure Coordinator EMBL-EBI, Wellcome Trust Genome Campus Cambridge CB10 1SD, UK Tel: +44-(0)1223-492507 From amonida at ebi.ac.uk Tue Dec 8 13:36:46 2015 From: amonida at ebi.ac.uk (Amonida Zadissa) Date: Tue, 08 Dec 2015 13:36:46 +0000 Subject: [ensembl-announce] Ensembl e83 is out! Message-ID: <5666DCEE.8000100@ebi.ac.uk> We are pleased to announce that the latest Ensembl update (e!83) has been released: http://www.ensembl.org/ Highlights of this release include: * Human: gene set updated to GENCODE 24, and new assembly patches (GRCh38.p5) * Manhattan plot track for LD * Advanced Filtering and Counts on Variant table * Minor allele frequency (MAF) filter on sequence mark-up views A complete list of the changes in release 83 can be found at http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at http://www.ensembl.info The release 83 blog post can be viewed here: http://www.ensembl.info/blog/2015/12/08/ensembl-83-has-been-released/ The e83 webinar is planned for Wednesday 16th Dec at 16:00 GMT, please register using the following URL. Registration is free. http://www.ebi.ac.uk/training/events/2015/ensembl-release-83-webinar Best regards, Amonida -- Amonida Zadissa Ensembl Production European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK From denise at ebi.ac.uk Wed Dec 16 08:29:15 2015 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Wed, 16 Dec 2015 08:29:15 +0000 Subject: [ensembl-announce] Ensembl Genomes release 30 is out! Message-ID: Dear all, We are delighted to announce that the latest update of Ensembl Genomes has been released. Highlights of this release include: ? Molecular and biological information from PHI-base (version 4.0) for thousands of genes in Protists and Fungi that are involved in pathogen-host interactions ? Small non-coding RNA genes in the diatom Phaeodactylum tricornutum (Rogato et al. 2014 ) ? Software update: version 83 of the Ensembl project for all our 30,586 genomes from 5,319 species ? Improved image export functionality from our websites ? Protein domains for Protists, Metazoa , Fungi and Plants recalculated with InterProScan (version 54.0) ? Updated BioMart: Protists, Metazoa, Fungi and Plants ? Updated gene trees in Plants Check out all the changes on our Ensembl Genomes website. Any questions or comments? Email us . Best wishes, The Ensembl Genomes team @ensemblgenomes -------------- next part -------------- An HTML attachment was scrubbed... URL: From dstaines at ebi.ac.uk Sat Dec 19 10:11:30 2015 From: dstaines at ebi.ac.uk (Dan Staines) Date: Sat, 19 Dec 2015 10:11:30 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 31 Intentions Message-ID: <2e5615b3d2757d7336676d6c17de2463@ebi.ac.uk> Release 31 of Ensembl Genomes is scheduled for 15th March 2016 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/31 Please note these are intentions and are therefore not guaranteed to be completed at release time. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Genomics Technology Infrastructure Coordinator EMBL-EBI, Wellcome Trust Genome Campus Cambridge CB10 1SD, UK Tel: +44-(0)1223-492507