From dstaines at ebi.ac.uk Tue Nov 11 13:20:40 2014 From: dstaines at ebi.ac.uk (Dan Staines) Date: Tue, 11 Nov 2014 13:20:40 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 24 Intentions In-Reply-To: <542ADCD1.2090803@ebi.ac.uk> References: <53F72974.4020400@ebi.ac.uk> <542ADCD1.2090803@ebi.ac.uk> Message-ID: <54620D28.90104@ebi.ac.uk> Due to infrastructure issues, we will not release EG 24 today as planned, but instead will make the release on Thursday 13th November. Best, Dan. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ From denise at ebi.ac.uk Mon Nov 17 11:13:59 2014 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Mon, 17 Nov 2014 11:13:59 -0000 Subject: [ensembl-announce] Ensembl Genomes release 24 is out! Message-ID: Dear all, We have just released the latest update of Ensembl Genomes. The highlights of our new release are: New Genomes Ensembl Metazoa *Zootermopsis nevadensis Ensembl Bacteria *4,310 new genomes: 20,254 genomes in total, including bacteria and archaea New Data Ensembl Plants *Barley genome assembly based on PopSeq data *SIFT scores for all missense variants in bread wheat *Inter-homoeologous variation (IHV) data in bread wheat *Variation data in tomato from the 150 Tomato Genome ReSequencing Project Ensembl Fungi *Variation data for Puccinia graminis Ug99 *DNA alignments for Hypocreales and Pucciniales Updated Data Ensembl Fungi *GO term projections from Schizosaccharomyces pombe and Saccharomyces cerevisiae to other species *Updated PHI-base data for plant pathogens Ensembl Fungi, Protists, Metazoa, and Plants We have also updated all BioMarts, gene trees, protein domain classification using InterPro version 48.0 and InterProScan version 5, and comparative genomics. A complete list of the changes can be found on the Ensembl Genomes website. Get in touch if you have any questions or comments. Best wishes, The Ensembl Genomes team From dstaines at ebi.ac.uk Mon Nov 17 13:59:00 2014 From: dstaines at ebi.ac.uk (Dan Staines) Date: Mon, 17 Nov 2014 13:59:00 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 25 Intentions Message-ID: <5469FF24.9090009@ebi.ac.uk> Dear all, Release 25 of Ensembl Genomes is scheduled for 8th January 2015 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/25 Please note these are intentions and are therefore not guaranteed to be completed for January. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ From dstaines at ebi.ac.uk Tue Nov 11 13:20:40 2014 From: dstaines at ebi.ac.uk (Dan Staines) Date: Tue, 11 Nov 2014 13:20:40 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 24 Intentions In-Reply-To: <542ADCD1.2090803@ebi.ac.uk> References: <53F72974.4020400@ebi.ac.uk> <542ADCD1.2090803@ebi.ac.uk> Message-ID: <54620D28.90104@ebi.ac.uk> Due to infrastructure issues, we will not release EG 24 today as planned, but instead will make the release on Thursday 13th November. Best, Dan. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ From denise at ebi.ac.uk Mon Nov 17 11:13:59 2014 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Mon, 17 Nov 2014 11:13:59 -0000 Subject: [ensembl-announce] Ensembl Genomes release 24 is out! Message-ID: Dear all, We have just released the latest update of Ensembl Genomes. The highlights of our new release are: New Genomes Ensembl Metazoa *Zootermopsis nevadensis Ensembl Bacteria *4,310 new genomes: 20,254 genomes in total, including bacteria and archaea New Data Ensembl Plants *Barley genome assembly based on PopSeq data *SIFT scores for all missense variants in bread wheat *Inter-homoeologous variation (IHV) data in bread wheat *Variation data in tomato from the 150 Tomato Genome ReSequencing Project Ensembl Fungi *Variation data for Puccinia graminis Ug99 *DNA alignments for Hypocreales and Pucciniales Updated Data Ensembl Fungi *GO term projections from Schizosaccharomyces pombe and Saccharomyces cerevisiae to other species *Updated PHI-base data for plant pathogens Ensembl Fungi, Protists, Metazoa, and Plants We have also updated all BioMarts, gene trees, protein domain classification using InterPro version 48.0 and InterProScan version 5, and comparative genomics. A complete list of the changes can be found on the Ensembl Genomes website. Get in touch if you have any questions or comments. Best wishes, The Ensembl Genomes team From dstaines at ebi.ac.uk Mon Nov 17 13:59:00 2014 From: dstaines at ebi.ac.uk (Dan Staines) Date: Mon, 17 Nov 2014 13:59:00 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 25 Intentions Message-ID: <5469FF24.9090009@ebi.ac.uk> Dear all, Release 25 of Ensembl Genomes is scheduled for 8th January 2015 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/25 Please note these are intentions and are therefore not guaranteed to be completed for January. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/