[ensembl-announce] Free Ensembl Webinar on Pre! - Human GRCh38, Amazon molly, crab-eating macaque and hedgehog
gspudich at ebi.ac.uk
Tue Apr 15 11:06:11 BST 2014
Reminder: we offer a free 20 minute webinar tomorrow (Wednesday, 4PM
BST) on what's available on Pre!
Sign up here:
On 07/04/2014 16:20, Rhoda Kinsella wrote:
> Dear all,
> We are pleased to announce that the initial annotation of the new
> human assembly, GRCh38, is now live on Ensembl Pre!
> *Highlights of GRCh38 Pre! include:*
> * Preliminary gene set including annotation on alternative loci
> (e.g. MHC haplotypes, LRC region)
> * Centromeres covering 2% of the genome
> * GENCODE 19 models mapped from e!75 (i.e. from GRCh37)
> * CCDS models mapped from e!75
> * RefSeq annotation release 106 models
> * Human-specific cDNA and EST alignments
> * Computed consequences of variants overlapping an Ensembl
> transcript using the projected Ensembl gene set (Download GVF and
> VCF files from Pre! FTP site <ftp://ftp.ensembl.org/pub/pre>)
> * Computed consequences for variants overlapping NCBI's RefSeq
> transcripts (Download GVF and VCF files from Pre! FTP site
> * Pre! site has been updated to use Solr search
> In addition to human we're pleased to announce that we also have Pre!
> sites available for a
> <http://pre.ensembl.org/Poecilia_formosa/Info/Index/>mazon molly
> <http://pre.ensembl.org/Poecilia_formosa/Info/Index/>, crab-eating
> macaque <http://pre.ensembl.org/Macaca_fascicularis/Info/Index/> and
> hedgehog <http://pre.ensembl.org/Erinaceus_europaeus/Info/Index/>.
> Keep an eye out for further GRCh38 annotation updates by checking the
> blog category GRCh38
> The Ensembl Pre! blog post with details about the GRCh38 annotation
> can be viewed here:
> We'll be running a free 20 minute webinar about the data on Ensembl
> Pre! on Wed 16 April at 4PM BST. To register, click on the following
> link: https://attendee.gototraining.com/r/8084872084204567809
> Rhoda Kinsella Ph.D.
> Ensembl Production Project Leader
> European Bioinformatics Institute (EMBL-EBI)
> European Molecular Biology Laboratory
> Wellcome Trust Genome Campus
> CB10 1SD
> Ensembl-campus mailing list
> Ensembl-campus at ebi.ac.uk
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