From maurel at ebi.ac.uk Wed Sep 4 14:18:59 2013 From: maurel at ebi.ac.uk (Thomas Maurel) Date: Wed, 4 Sep 2013 14:18:59 +0100 Subject: [ensembl-announce] Ensembl release 73 is out! Message-ID: <3C0FDE5C-A171-4043-A0E2-CB4DD442BF2E@ebi.ac.uk> We are pleased to announce that the latest Ensembl update (e!73) has been released : http://www.ensembl.org/ Highlights of this release include: Human: Updated patches for the human assembly (GRCh37.p12) Updated HAVANA manual curation for human Import of PhenCode data for human New species: Flycatcher (Ficedulla albicollis) Duck (Anas platyrhynchos) Other species: Updated HAVANA manual curation for zebrafish Updated gene set for rabbit, including RNAseq data. Other news: New search engine (Solr) A complete list of the changes in release 73 can be found at http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at http://www.ensembl.info The release blog post can be viewed here: http://www.ensembl.info/blog/2013/09/04/ensembl-73-has-been-released/ Best Regards, Thomas -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom -------------- next part -------------- An HTML attachment was scrubbed... URL: From denise at ebi.ac.uk Fri Sep 13 10:36:33 2013 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Fri, 13 Sep 2013 10:36:33 +0100 Subject: [ensembl-announce] Ensembl Genomes release 20 is out! Message-ID: Dear all, We are thrilled to announce that the latest update of Ensembl Genomes has been released. The highlights of our new release are: New genomes Ensembl Fungi Blumeria graminis and Microbotryum violaceum Ensembl Plants First release of the Chromosome Survey Sequence for bread wheat cv Chinese Spring generated by the International Wheat Genome Sequencing Ensembl Bacteria 2,802 new genomes included (9089 genomes now represented in total) New data Ensembl Metazoa New variation data for Anopheles gambiae (from VectorBase), originating from the Wellcome Trust Sanger Institute?s Malaria Programme?s Anopheles gambiae Genome Variation Project. Ensembl Bacteria Operon data for E. coli K-12 imported from RegulonDB New cross references added to Rhea and MetaCyc, and the Enzyme Classification of the IUBMB Updated assemblies Ensembl Plants Oryza sativa (IRGSP v1.0) Ensembl Metazoa Acyrthosiphon pisum (AphidBase 2.0) Apis mellifera (BeeBase 4.0) Strongylocentrotus purpuratus (SpBase 3.0) Updated data Ensembl Fungi, Ensembl Protists and Ensembl Plants Manually curated ontology annotations in model organisms projected to orthologous genes Cross-references to PHI-base added for 4 additional species of plant pathogens Assembly converter The Ensembl Assembly converter, which can map feature coordinates from one version of a genome assembly to another, is now also available for all species in Ensembl Metazoa, Fungi, Plants, and Protists. It can be accessed online or programmatically (Perl API or REST service). Any questions or comments? Contact us at helpdesk at ensemblgenomes.org The Ensembl Genomes Team p.s. the public MySQL will be available shortly. From dstaines at ebi.ac.uk Tue Sep 17 19:54:03 2013 From: dstaines at ebi.ac.uk (Dan Staines) Date: Tue, 17 Sep 2013 19:54:03 +0100 Subject: [ensembl-announce] Ensembl Genomes Release 20 Intentions Message-ID: <5238A54B.5070909@ebi.ac.uk> Dear all, Release 21 of Ensembl Genomes is scheduled for 26th November 2013 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/21 Please note these are intentions and are therefore not guaranteed to be completed for November. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Technical Coordinator, Ensembl Genomes European Bioinformatics Institute (EMBL-EBI) http://www.ebi.ac.uk/ http://www.ensemblgenomes.org/ From amonida at ebi.ac.uk Wed Sep 25 09:04:38 2013 From: amonida at ebi.ac.uk (Amonida Zadissa) Date: Wed, 25 Sep 2013 09:04:38 +0100 Subject: [ensembl-announce] Declarations of intentions for Ensembl release 74 Message-ID: <52429916.2090009@ebi.ac.uk> Hi all, Please find the summary of the declarations of intentions for Ensembl release 74 (scheduled for the 13th of November 2013) on our public website: admin.ensembl.org/Changelog/Summary. Note these are intentions and are not guaranteed to be in the release. Thanks, Amonida From maurel at ebi.ac.uk Wed Sep 4 14:18:59 2013 From: maurel at ebi.ac.uk (Thomas Maurel) Date: Wed, 4 Sep 2013 14:18:59 +0100 Subject: [ensembl-announce] Ensembl release 73 is out! Message-ID: <3C0FDE5C-A171-4043-A0E2-CB4DD442BF2E@ebi.ac.uk> We are pleased to announce that the latest Ensembl update (e!73) has been released : http://www.ensembl.org/ Highlights of this release include: Human: Updated patches for the human assembly (GRCh37.p12) Updated HAVANA manual curation for human Import of PhenCode data for human New species: Flycatcher (Ficedulla albicollis) Duck (Anas platyrhynchos) Other species: Updated HAVANA manual curation for zebrafish Updated gene set for rabbit, including RNAseq data. Other news: New search engine (Solr) A complete list of the changes in release 73 can be found at http://www.ensembl.org/info/website/news.html For the latest news from the Ensembl project visit our blog at http://www.ensembl.info The release blog post can be viewed here: http://www.ensembl.info/blog/2013/09/04/ensembl-73-has-been-released/ Best Regards, Thomas -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom -------------- next part -------------- An HTML attachment was scrubbed... URL: From denise at ebi.ac.uk Fri Sep 13 10:36:33 2013 From: denise at ebi.ac.uk (Denise Carvalho-Silva) Date: Fri, 13 Sep 2013 10:36:33 +0100 Subject: [ensembl-announce] Ensembl Genomes release 20 is out! Message-ID: Dear all, We are thrilled to announce that the latest update of Ensembl Genomes has been released. The highlights of our new release are: New genomes Ensembl Fungi Blumeria graminis and Microbotryum violaceum Ensembl Plants First release of the Chromosome Survey Sequence for bread wheat cv Chinese Spring generated by the International Wheat Genome Sequencing Ensembl Bacteria 2,802 new genomes included (9089 genomes now represented in total) New data Ensembl Metazoa New variation data for Anopheles gambiae (from VectorBase), originating from the Wellcome Trust Sanger Institute?s Malaria Programme?s Anopheles gambiae Genome Variation Project. Ensembl Bacteria Operon data for E. coli K-12 imported from RegulonDB New cross references added to Rhea and MetaCyc, and the Enzyme Classification of the IUBMB Updated assemblies Ensembl Plants Oryza sativa (IRGSP v1.0) Ensembl Metazoa Acyrthosiphon pisum (AphidBase 2.0) Apis mellifera (BeeBase 4.0) Strongylocentrotus purpuratus (SpBase 3.0) Updated data Ensembl Fungi, Ensembl Protists and Ensembl Plants Manually curated ontology annotations in model organisms projected to orthologous genes Cross-references to PHI-base added for 4 additional species of plant pathogens Assembly converter The Ensembl Assembly converter, which can map feature coordinates from one version of a genome assembly to another, is now also available for all species in Ensembl Metazoa, Fungi, Plants, and Protists. It can be accessed online or programmatically (Perl API or REST service). Any questions or comments? Contact us at helpdesk at ensemblgenomes.org The Ensembl Genomes Team p.s. the public MySQL will be available shortly. From dstaines at ebi.ac.uk Tue Sep 17 19:54:03 2013 From: dstaines at ebi.ac.uk (Dan Staines) Date: Tue, 17 Sep 2013 19:54:03 +0100 Subject: [ensembl-announce] Ensembl Genomes Release 20 Intentions Message-ID: <5238A54B.5070909@ebi.ac.uk> Dear all, Release 21 of Ensembl Genomes is scheduled for 26th November 2013 - our intentions for this release can be found here: http://ensemblgenomes.org/info/release/21 Please note these are intentions and are therefore not guaranteed to be completed for November. Best regards, Dan Staines, on behalf of the Ensembl Genomes team. -- Dan Staines, PhD Technical Coordinator, Ensembl Genomes European Bioinformatics Institute (EMBL-EBI) http://www.ebi.ac.uk/ http://www.ensemblgenomes.org/ From amonida at ebi.ac.uk Wed Sep 25 09:04:38 2013 From: amonida at ebi.ac.uk (Amonida Zadissa) Date: Wed, 25 Sep 2013 09:04:38 +0100 Subject: [ensembl-announce] Declarations of intentions for Ensembl release 74 Message-ID: <52429916.2090009@ebi.ac.uk> Hi all, Please find the summary of the declarations of intentions for Ensembl release 74 (scheduled for the 13th of November 2013) on our public website: admin.ensembl.org/Changelog/Summary. Note these are intentions and are not guaranteed to be in the release. Thanks, Amonida