From maurel at ebi.ac.uk Thu Nov 8 14:58:34 2012 From: maurel at ebi.ac.uk (Thomas Maurel) Date: Thu, 8 Nov 2012 14:58:34 +0000 Subject: [ensembl-announce] Declarations of intentions for Ensembl Release 70 Message-ID: <2BEE2B53-C906-4221-A43C-9752EB0527CA@ebi.ac.uk> Dear all, Please find the summary of the declarations of intentions for Ensembl release 70 (scheduled for the 15th of January 2013) on our public website : admin.ensembl.org/Changelog/Summary. Note these are intentions and are not guaranteed to be in the release. Best regards, Thomas Maurel -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK -------------- next part -------------- An HTML attachment was scrubbed... URL: From dstaines at ebi.ac.uk Mon Nov 12 15:08:39 2012 From: dstaines at ebi.ac.uk (Dan Staines) Date: Mon, 12 Nov 2012 15:08:39 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 17 Intentions Message-ID: <50A110F7.5070205@ebi.ac.uk> Dear all, Please find attached a summary of our intentions for release 17 of Ensembl Genomes, due out on 29th January 2013. Please note these are intentions and are therefore not guaranteed to be completed for January. These can also be viewed online at: http://ensemblgenomes.org/info/release17 Best regards, Dan Staines, on behalf of the Ensembl Genomes team. General - Release scheduled for 29th January 2013 - Update to Ensembl 70 software - Update of pan homology comparative genomics database to include latest versions of genomes from Ensembl and Ensembl Genomes - Reorganised options in BioMart to improve usability Protists - New genomes -- Giardia lamblia - Updated data -- Updated peptide comparative genomics -- Updated DNA alignments for Plasmodia -- Updated BioMarts Metazoa - Updated genomes -- Anopheles gambiae updated gene models -- Drosophila pseudoobscura (FlyBase version 2.30) -- Drosophila simulans (FlyBase version 1.4) -- Tribolium castaneum (Fix missing linkage group; latest gene set from BeetleBase, 2012-09-24) - Updated data -- Updated cross-references for all Drosophila species -- Updated peptide comparative genomics -- Updated BioMart Plants - New data -- Hordeum vulgare (barley) variation and transcriptomics data to be added. -- Triticum aestivum (wheat) ESTs added in the syntenic context of Brachypodium. -- Enable the assembly converter tool for Arabidopsis thaliana and Vitis vinifera (grape). -- Additional DNA alignments to be added between several plant species. - Updated data -- Updated 'unlocalised' chromosomes for Hordeum vulgare using arm -- sorted survey sequences. -- Selenocysteine updates for Chlamydomonas reinhardtii protein translations. Fungi - New genomes -- Komagataella (Pichia) pastoris -- Sporisorium reilianum -- Pyrenophora teres f. teres -- Pyrenophora tritici-repentis -- Glomerella graminicola - Updated genomes -- Botryotinia fuckeliana (new assembly) -- Schizosaccharomyces pombe (latest data from PomBase) - New data -- Melampsora larici-populina EST alignments -- Botryotinia fuckeliana EST alignments -- Leptosphaeria maculans EST alignments -- DNA comparative alignments of Pyrenophora spp. -- RNASeq data for Mycosphaerella graminicola - Updated data -- Updated peptide comparative genomics -- Updated BioMarts Bacteria - No significant updates planned. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ From maurel at ebi.ac.uk Thu Nov 8 14:58:34 2012 From: maurel at ebi.ac.uk (Thomas Maurel) Date: Thu, 8 Nov 2012 14:58:34 +0000 Subject: [ensembl-announce] Declarations of intentions for Ensembl Release 70 Message-ID: <2BEE2B53-C906-4221-A43C-9752EB0527CA@ebi.ac.uk> Dear all, Please find the summary of the declarations of intentions for Ensembl release 70 (scheduled for the 15th of January 2013) on our public website : admin.ensembl.org/Changelog/Summary. Note these are intentions and are not guaranteed to be in the release. Best regards, Thomas Maurel -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK -------------- next part -------------- An HTML attachment was scrubbed... URL: From dstaines at ebi.ac.uk Mon Nov 12 15:08:39 2012 From: dstaines at ebi.ac.uk (Dan Staines) Date: Mon, 12 Nov 2012 15:08:39 +0000 Subject: [ensembl-announce] Ensembl Genomes Release 17 Intentions Message-ID: <50A110F7.5070205@ebi.ac.uk> Dear all, Please find attached a summary of our intentions for release 17 of Ensembl Genomes, due out on 29th January 2013. Please note these are intentions and are therefore not guaranteed to be completed for January. These can also be viewed online at: http://ensemblgenomes.org/info/release17 Best regards, Dan Staines, on behalf of the Ensembl Genomes team. General - Release scheduled for 29th January 2013 - Update to Ensembl 70 software - Update of pan homology comparative genomics database to include latest versions of genomes from Ensembl and Ensembl Genomes - Reorganised options in BioMart to improve usability Protists - New genomes -- Giardia lamblia - Updated data -- Updated peptide comparative genomics -- Updated DNA alignments for Plasmodia -- Updated BioMarts Metazoa - Updated genomes -- Anopheles gambiae updated gene models -- Drosophila pseudoobscura (FlyBase version 2.30) -- Drosophila simulans (FlyBase version 1.4) -- Tribolium castaneum (Fix missing linkage group; latest gene set from BeetleBase, 2012-09-24) - Updated data -- Updated cross-references for all Drosophila species -- Updated peptide comparative genomics -- Updated BioMart Plants - New data -- Hordeum vulgare (barley) variation and transcriptomics data to be added. -- Triticum aestivum (wheat) ESTs added in the syntenic context of Brachypodium. -- Enable the assembly converter tool for Arabidopsis thaliana and Vitis vinifera (grape). -- Additional DNA alignments to be added between several plant species. - Updated data -- Updated 'unlocalised' chromosomes for Hordeum vulgare using arm -- sorted survey sequences. -- Selenocysteine updates for Chlamydomonas reinhardtii protein translations. Fungi - New genomes -- Komagataella (Pichia) pastoris -- Sporisorium reilianum -- Pyrenophora teres f. teres -- Pyrenophora tritici-repentis -- Glomerella graminicola - Updated genomes -- Botryotinia fuckeliana (new assembly) -- Schizosaccharomyces pombe (latest data from PomBase) - New data -- Melampsora larici-populina EST alignments -- Botryotinia fuckeliana EST alignments -- Leptosphaeria maculans EST alignments -- DNA comparative alignments of Pyrenophora spp. -- RNASeq data for Mycosphaerella graminicola - Updated data -- Updated peptide comparative genomics -- Updated BioMarts Bacteria - No significant updates planned. -- Dan Staines, PhD Ensembl Genomes Technical Coordinator EMBL-EBI Tel: +44-(0)1223-492507 Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/