[ensembl-dev] VEP Cache Gene List

[Michael Milton]

Hi, I'm using VEP with a downloaded cache, and it seems that VEP is annotating some non-hgnc gene symbols or at least outdated symbols. I need a gene list including all possible genes that VEP could output for a downstream application. Is there a definitive list of genes that VEP could output? Otherwise, what source is used to build the VEP cache?


Some of the superceded gene symbols it's outputting, using the Ensembl 83 refseq cache, are:

  *   GLTPD1
  *   C1orf86
  *   C7orf63
  *   PCNXL3

Thanks!

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