[ensembl-dev] Fetching genomic alignments with Ensembl REST API

Greg Slodkowicz gregs at ebi.ac.uk
Thu Jan 2 12:59:25 GMT 2014


Hi Ensembl-dev,
I'm trying to fetch some genomic alignments using the GET
alignment/slice/region/ endpoint from the REST API but my requests are
timing out with HTTP response 504.

This is what my request looks like:
http://beta.rest.ensembl.org/alignment/slice/region/homo_sapiens/1:61330930-61928465:1?species_set_group=mammals
Am I doing something wrong?

I was also wondering what the difference between alignment/slice/region/
and alignment/block/region/:species/:region is?

Best,
Greg

-- 
Greg Slodkowicz
PhD student, Nick Goldman group
European Bioinformatics Institute (EMBL-EBI)
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