[ensembl-dev] (B)LASTZ alignments in Ensembl Compara

[WATSON Mick]

Hi

I'm trying to get to grips with (B)LASTZ alignments in ensembl-compara.  

Am I correct to assume that multiple hits are not handled?  i.e. if a region in human has been duplicated in pig, then only one of those relationships will be stored?

Thanks
Mick


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