[ensembl-dev] Getting GFF3 files from Ensembl MySQL database.
Paul Linehan
linehanp at tcd.ie
Thu Dec 19 13:58:55 GMT 2013
Hi Dan,
> Not sure how well this meets your needs but we (Ensembl Genomes) actually
> provide dumps of GFF3 files on our FTP site e.g.
> ftp://ftp.ensemblgenomes.org/pub/current/metazoa/gff3/caenorhabditis_elegans/
> You can also export data for regions of genome in a variety of formats
> including GFF3 using our REST server e.g.
> http://beta.rest.ensemblgenomes.org/documentation/info/feature_region
<Paul smacks forehead in Homer Simpsonesque manner, crying "Doh"...>
This looks to be just what I wanted - how did I miss that? I wasn't
going through
Ensembl genomes though - just Ensembl. Lesson for next time!
> Hope this helps!
Great - thanks for that!
Paul...
> Dan.
--
linehanp at tcd.ie
Mob: 00 353 86 864 5772
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