[ensembl-dev] determining consequences of SNPs

Andrea Edwards edwardsa at cs.man.ac.uk
Fri Mar 18 20:06:25 GMT 2011


Hello

When ensembl calculates the consequence of an exonic SNP as 
synonymous/non-synonmous etc, does it use the genomic sequence or mRNA 
sequences. I believe the former is more accurate as mRNA sequences can 
different from the genomic sequence?

thanks a lot




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